In the sixth season episode “Inquisition,” Luther Sloan attempts to recruit Julian Bashir, who despite a long friendship with the former Cardassian spy Garak can’t bring himself to condone Section 31’s existence, which to this point had been largely unknown outside of its own circles.
In the seventh season episode “Inter Arma Enim Silent Leges” (in times of war the law falls silent) Bashir again runs into Sloan, realizing that Starfleet, in its increasing desperation during the Dominion War, has knowingly embraced Section 31’s questionable tactics. Fans as eagerly embraced this second spotlight as they had the first, both serving as pinnacle demonstrations of the morally gray areas so often associated with the series.
Late that season, Bashir confronts Sloan directly in “Extreme Measures” when he realizes Section 31 was responsible for a genocidal plague inflicted on the Founders that has inadvertently (?) also infected Odo.
Section 31 shows up in the fourth season of Enterprise, with the revelation that Malcolm Reed once worked for Section 31. Captain Archer takes a dim view on the revelation when Reed struggles to come clean in “Affliction”/“Divergence,” in which we meet his former handler Harris.
The idea is reprised on a far grander stage in Star Trek Into Darkness, in which we learn Admiral Marcus is also a part of Section 31, and thinks of nothing to use it in an attempt to launch all-out war with the Klingons.
Section 31 factors heavily into the serialized storytelling in the second season of Discovery, which features Agent Leland and new recruits Mirror Georgiou and Ash Tyler. There remains in development a full Section 31 spin-off which at one time was speculated to feature Georgiou and Tyler, although developments since that and the third season have perhaps complicated things.
With the movie appearance and heavy presence in and potential spin-off from Discovery, Section 31 has turned into as significant a development of modern Star Trek as anything else you could name. A certain step away from the original hopeful vision of the future Gene Roddenberry envisioned, Section 31 instead of a contradiction often serves to distinguish the enduring morals of the main characters. When Bashir or Kirk reject its tactics, we cheer them as heroes. When Mirror Georgiou embraces Section 31, we’re not surprised. When Tyler finds a temporary refuge in his crazy life, we can even begin to see it in a different light. In modern Star Trek, too, is the ability to see the good even in the bad (a legacy dating all the way back to “Balance of Terror”).
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